Mercurial > repos > bimib > cobraxy

diff COBRAxy/flux_simulation.xml @ 381:0a3ca20848f3 draft

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Uploaded
author francesco_lapi
date Fri, 05 Sep 2025 09:18:26 +0000
parents d905439271fa
children 97eea560a10f
line wrap: on
line diff
--- a/COBRAxy/flux_simulation.xml	Fri Sep 05 08:27:04 2025 +0000
+++ b/COBRAxy/flux_simulation.xml	Fri Sep 05 09:18:26 2025 +0000
@@ -114,7 +114,7 @@
    - Biomass sensitivity analysis (single reaction knock-out). It is the ratio between the optimal of the Biomass reaction computed by FBA after knocking-out a reaction and the same over the complete model.
 
 Accepted files:
-   - A model: JSON or XML file reporting reactions and rules contained in the model. It can be ENGRO2 or a custom model. 
+   - A model: JSON, XML, MAT or YAML (.yml) file reporting reactions and rules contained in the model. Supported compressed formats: .zip, .gz and .bz2. Filename must follow the pattern: {model_name}.{extension}.[zip|gz|bz2]
    - Context-specific bounds: generated by RAS to Bounds tool. This can be a collection of bounds too (one bounds file per context).
 
 Output: