Mercurial > repos > bimib > cobraxy

diff COBRAxy/fromCSVtoCOBRA_beta.py @ 455:4e2bc80764b6 draft

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Uploaded
author francesco_lapi
date Fri, 12 Sep 2025 15:05:54 +0000
parents 3654c08668f1
children a6e45049c1b9
line wrap: on
line diff
--- a/COBRAxy/fromCSVtoCOBRA_beta.py	Thu Sep 11 21:02:09 2025 +0000
+++ b/COBRAxy/fromCSVtoCOBRA_beta.py	Fri Sep 12 15:05:54 2025 +0000
@@ -63,6 +63,7 @@
             logging.error('Input file not found: %s', ARGS.input)
 
         out_dir = os.path.dirname(os.path.abspath(ARGS.output))
+        
         if out_dir and not os.path.isdir(out_dir):
             try:
                 os.makedirs(out_dir, exist_ok=True)
@@ -70,7 +71,6 @@
             except Exception as e:
                 logging.exception('Cannot create output directory: %s', out_dir)
 
-        # Build the model from the CSV (NOTE: use ARGS.input here)
         model = modelUtils.build_cobra_model_from_csv(ARGS.input)
 
         # Save model in requested format