diff COBRAxy/docs/index.html @ 492:4ed95023af20 draft

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author francesco_lapi
date Tue, 30 Sep 2025 14:02:17 +0000
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+++ b/COBRAxy/docs/index.html	Tue Sep 30 14:02:17 2025 +0000
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+<!DOCTYPE html>
+<html lang="en">
+<head>
+  <meta charset="UTF-8">
+  <title>COBRAxy Documentation</title>
+  <meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1" />
+  <meta name="description" content="COBRAxy - A Python toolkit for metabolic flux analysis and visualization">
+  <meta name="viewport" content="width=device-width, initial-scale=1.0, minimum-scale=1.0">
+  <link rel="stylesheet" href="//cdn.jsdelivr.net/npm/docsify@4/lib/themes/dark.css">
+  <style>
+    :root {
+      --theme-color: #4CAF50;
+      --text-color-base: #e1e4e8;
+      --background-color: #0d1117;
+      --sidebar-background: #161b22;
+      --code-background: #21262d;
+    }
+    
+    body {
+      background-color: var(--background-color);
+      color: var(--text-color-base);
+    }
+    
+    .sidebar {
+      background-color: var(--sidebar-background);
+      border-right: 1px solid #30363d;
+    }
+    
+    .sidebar-nav a {
+      color: var(--text-color-base);
+    }
+    
+    .sidebar-nav a:hover {
+      color: var(--theme-color);
+    }
+    
+    .app-name-link {
+      color: var(--theme-color) !important;
+      font-weight: 600;
+    }
+    
+    .app-name img {
+      max-height: 50px;
+      max-width: 250px;
+      margin-right: 10px;
+      vertical-align: middle;
+    }
+    
+    .sidebar > h1 > img {
+      max-height: 50px;
+      width: auto;
+    }
+    
+    .markdown-section {
+      background-color: var(--background-color);
+      color: var(--text-color-base);
+    }
+    
+    .markdown-section code {
+      background-color: var(--code-background);
+      color: #f0f6fc;
+      border-radius: 6px;
+      padding: 0.2em 0.4em;
+      border: 1px solid #30363d;
+    }
+    
+    .markdown-section pre {
+      background-color: var(--code-background);
+      border: 1px solid #30363d;
+    }
+    
+    .markdown-section pre > code {
+      background-color: var(--code-background);
+      color: #f0f6fc;
+    }
+    
+    .markdown-section table {
+      border-collapse: collapse;
+      border: 1px solid #30363d;
+    }
+    
+    .markdown-section th,
+    .markdown-section td {
+      border: 1px solid #30363d;
+      background-color: var(--code-background);
+    }
+    
+    .markdown-section th {
+      background-color: #21262d;
+      font-weight: 600;
+    }
+  </style>
+</head>
+<body>
+  <div id="app"></div>
+  <script>
+    window.$docsify = {
+      name: 'COBRAxy',
+      logo: './_media/logo.png',
+      loadSidebar: true,
+      loadNavbar: false,
+      subMaxLevel: 3,
+      auto2top: true,
+      
+      // Search plugin
+      search: {
+        maxAge: 86400000, // Expiration time, the default one day
+        paths: 'auto',
+        placeholder: 'Search documentation...',
+        noData: 'No results found.',
+        depth: 3
+      },
+      
+      // Copy code plugin  
+      copyCode: {
+        buttonText: 'Copy',
+        errorText: 'Error',
+        successText: 'Copied'
+      },
+      
+      // Zoom image plugin
+      zoom: {
+        selector: '.medium-zoom-image',
+        delay: 1000,
+        options: {
+          bgColor: 'rgba(0,0,0,0.8)',
+          zIndex: 99999
+        }
+      },
+      
+      // Tabs plugin
+      tabs: {
+        persist: true,
+        sync: true,
+        theme: 'classic',
+        tabComments: true,
+        tabHeadings: true
+      }
+    }
+  </script>
+  
+  <!-- Core Docsify -->
+  <script src="//cdn.jsdelivr.net/npm/docsify@4"></script>
+  
+  <!-- Search plugin -->
+  <script src="//cdn.jsdelivr.net/npm/docsify/lib/plugins/search.min.js"></script>
+  
+  <!-- Copy code plugin -->
+  <script src="//cdn.jsdelivr.net/npm/docsify-copy-code@2"></script>
+  
+  <!-- Zoom image plugin -->
+  <script src="//cdn.jsdelivr.net/npm/docsify/lib/plugins/zoom-image.min.js"></script>
+  
+  <!-- Tabs plugin -->
+  <script src="//cdn.jsdelivr.net/npm/docsify-tabs@1"></script>
+  
+  <!-- Code syntax highlighting -->
+  <script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-bash.min.js"></script>
+  <script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-python.min.js"></script>
+  <script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-yaml.min.js"></script>
+  <script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-xml.min.js"></script>
+  <script src="//cdn.jsdelivr.net/npm/prismjs@1/components/prism-json.min.js"></script>
+</body>
+</html>
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