Mercurial > repos > bimib > cobraxy
diff COBRAxy/docs/tutorials/README.md @ 547:73f2f7e2be17 draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Tue, 28 Oct 2025 10:44:07 +0000 |
| parents | fcdbc81feb45 |
| children |
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--- a/COBRAxy/docs/tutorials/README.md Mon Oct 27 12:33:08 2025 +0000 +++ b/COBRAxy/docs/tutorials/README.md Tue Oct 28 10:44:07 2025 +0000 @@ -4,23 +4,11 @@ ## Available Tutorials -| Tutorial | Duration | Description | -|----------|----------|-------------| -| [Galaxy Setup](tutorials/galaxy-setup) | 30 min | Set up Galaxy for web-based analysis | - -## Web Interface Tutorial - -### [Galaxy Setup Tutorial](tutorials/galaxy-setup) - -Set up a local Galaxy instance with COBRAxy tools for point-and-click analysis. Perfect for users who prefer graphical interfaces and reproducible workflows. - -## Prerequisites - -Before starting the tutorials, make sure you have: - -- ✅ [COBRAxy installed](installation) -- ✅ Basic understanding of metabolic modeling (helpful but not required) -- ✅ Familiarity with command line basics +| Tutorial | Description | +|----------|-------------| +| [Galaxy Setup](tutorials/galaxy-setup) | Set up Galaxy for web-based analysis | +| | | +| | | ## Tutorial Data @@ -28,22 +16,18 @@ ```bash # Download tutorial data -wget https://github.com/CompBtBs/COBRAxy/releases/download/v1.0/tutorial_data.zip +wget https://github.com/CompBtBs/COBRAxy/blob/main/data_tutorial/data_tutorial.zip unzip tutorial_data.zip ``` -The tutorial data includes: -- Sample gene expression datasets -- Metabolite abundance data -- Pre-configured Galaxy workflows -- Expected output files for verification +The tutorial data includes Sample gene expression datasets (Cancer.txt and Normal.txt) ## Getting Help If you encounter issues during tutorials: 1. Check the specific tutorial's troubleshooting section -2. Refer to the main [Troubleshooting Guide](/troubleshooting.md) +2. Refer to the main [Troubleshooting Guide](troubleshooting) ## Contributing @@ -53,4 +37,4 @@ - [Report issues](https://github.com/CompBtBs/COBRAxy/issues) - Suggest new tutorial topics -Ready to start? Pick your first tutorial above! 🚀 \ No newline at end of file +Ready to start? Pick your first tutorial above! 🚀