Mercurial > repos > bimib > cobraxy
diff COBRAxy/custom_data_generator.py @ 353:d13b39f183a5 draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Thu, 04 Sep 2025 23:03:26 +0000 |
| parents | 14be2a1071c7 |
| children | 62de44378930 |
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--- a/COBRAxy/custom_data_generator.py Thu Sep 04 22:54:57 2025 +0000 +++ b/COBRAxy/custom_data_generator.py Thu Sep 04 23:03:26 2025 +0000 @@ -43,6 +43,10 @@ parser.add_argument('-idop', '--output_path', type = str, default='result', help = 'output path for the result files (default: result)') + parser.add_argument("--tool_dir", type=str, default=os.path.dirname(__file__), + help="Tool directory (passed from Galaxy as $__tool_directory__)") + + return parser.parse_args(args) @@ -217,7 +221,7 @@ # Load built-in model (Model.getCOBRAmodel uses tool_dir to locate local models) try: - model = model_enum.getCOBRAmodel() + model = model_enum.getCOBRAmodel(toolDir=ARGS.tool_dir) except Exception as e: # Wrap/normalize load errors as DataErr for consistency raise utils.DataErr(ARGS.model, f"failed loading built-in model: {e}")