Mercurial > repos > bimib > cobraxy

diff COBRAxy/custom_data_generator.py @ 396:dab29c3a5281 draft

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Uploaded
author francesco_lapi
date Fri, 05 Sep 2025 13:28:09 +0000
parents 64563ca68ace
children de4a373e338b
line wrap: on
line diff
--- a/COBRAxy/custom_data_generator.py	Fri Sep 05 13:22:34 2025 +0000
+++ b/COBRAxy/custom_data_generator.py	Fri Sep 05 13:28:09 2025 +0000
@@ -249,7 +249,8 @@
                 model.reactions.get_by_id(reaction).lower_bound = -float(value)
 
     if ARGS.name == "ENGRO2" and ARGS.gene_format != "Default":
-        model = utils.convert_genes(model, ARGS.gene_format)
+
+        model = utils.convert_genes(model, ARGS.gene_format.replace(" ", "_"))
 
     # generate data
     rules = generate_rules(model, asParsed = False)