Mercurial > repos > bimib > cobraxy

diff COBRAxy/custom_data_generator.xml @ 392:f73d57641124 draft

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Uploaded
author francesco_lapi
date Fri, 05 Sep 2025 10:53:36 +0000
parents a2dee883176e
children 52658ddcaa5d
line wrap: on
line diff
--- a/COBRAxy/custom_data_generator.xml	Fri Sep 05 10:50:12 2025 +0000
+++ b/COBRAxy/custom_data_generator.xml	Fri Sep 05 10:53:36 2025 +0000
@@ -26,6 +26,9 @@
         #if $cond_model.medium_selector == 'Custom'
             --medium $cond_model.medium
         #end if
+
+        --gene_format $gene_format
+        
         --out_log $log
         --out_tabular $out_tabular
         ]]>
@@ -80,6 +83,14 @@
                 </conditional>
             </when>
         </conditional>
+
+        <param name="gene_format" argument="--gene_format" type="select" label="Gene nomenclature format:">
+            <option value="Default" selected="true">Keep original gene nomenclature</option>
+            <option value="ENSNG">ENSNG (Ensembl Gene ID)</option>
+            <option value="HGNC_SYMBOL">HGNC Symbol</option>
+            <option value="HGNC_ID">HGNC ID</option>
+            <option value="ENTREZ">Entrez Gene ID</option>
+        </param>
     </inputs>
 
     <outputs>