diff COBRAxy/docs/tutorials/README.md @ 550:4cf00f21f609 draft default tip

Uploaded

--- a/COBRAxy/docs/tutorials/README.md	Wed Oct 29 11:09:38 2025 +0000
+++ b/COBRAxy/docs/tutorials/README.md	Mon Nov 03 14:49:49 2025 +0000
@@ -2,13 +2,27 @@
 
 Learn COBRAxy through hands-on tutorials for web-based analysis.
 
-## Available Tutorials
+To set up Galaxy and start using it for web-based analyses, see the [Galaxy Setup](tutorials/galaxy-setup)
+
+## Available Workflows
+
+This is a collection of GALAXY workflows illustrating different applications of the tool.
+The general repository is at the following link: [Galaxy workflows](http://marea4galaxy.cloud.ba.infn.it/galaxy/workflows/list_published). 
+
+To use a workflow, click the "Import" button, and it will be added to your personal workflow page.
 
 | Tutorial | Description |
 |----------|-------------|
-| [Galaxy Setup](tutorials/galaxy-setup) | Set up Galaxy for web-based analysis |
-|  |  |
-|  |  |
+|[Flux Enrichment Analysis - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=a64417ff266b740e) | Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
+| [Flux Enrichment Analysis (sampling mean) - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=16e792953f5b45db) |  Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
+| [Flux clustering (sampling mean) + Flux Enrichment Analys](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=c851ab275e52f8af) | Creation of maps of the fluxes, using one dataset differently expressed for each condition and its sample group specification|
+| [Flux Enrichment Analysis (pFBA) - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=bf0806da5b28c6d9) | Creation of maps of the fluxes differently expressed between two conditions. One gene expression dataset different for each condition. |
+| [Flux clustering (pFBA) + Flux Enrichment Analysis](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=be0a27b9edd0db03) | Creation of maps of the fluxes, using one dataset differently expressed for each condition and its sample group specification |
+| [RAS clustering + Reaction Enrichment Analysis](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=81991b32733a4fc4) | Creation of RAS maps, one single expression gene dataset and its sample group specification |
+| [Reaction Enrichment Analysis - unified datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=0d16186aaff7cbfd) |Creation of RAS maps starting from an expression dataset and its corresponding classes. One gene expression dataset as input and its classes to compare. |
+| [Reaction Enrichment Analysis - separated datasets](http://marea4galaxy.cloud.ba.infn.it/galaxy/published/workflow?id=290670ee50ab85f0) | Creation of RAS maps using the tool MaREA. Confrontation of two datasets that must be different from one another. |
+
+A more detailed description of the tools is available on the corresponding GALAXY page.
 
 ## Tutorial Data