Mercurial > repos > bimib > cobraxy

diff COBRAxy/rps_generator.py @ 281:5dd2ab4637aa draft default tip

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author francesco_lapi
date Mon, 12 May 2025 17:44:39 +0000
parents 49c0b28a203f
children
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line diff
--- a/COBRAxy/rps_generator.py	Mon May 12 17:39:26 2025 +0000
+++ b/COBRAxy/rps_generator.py	Mon May 12 17:44:39 2025 +0000
@@ -218,9 +218,10 @@
         rps_scores[cell_line_name] = calculate_rps(reactions, abundances, black_list, missing_list)
     
     df = pd.DataFrame.from_dict(rps_scores)
-    print(df)
-    df.rename(columns={'Unnamed: 0': 'Reactions'}, inplace=True)
-    df.to_csv(ARGS.rps_output, sep = '\t', na_rep = "None", index = False)
+
+    df.index.name = 'Reactions'
+    df.to_csv(ARGS.rps_output, sep='\t', na_rep='None', index=True)
+
 
 ############################ main ####################################
 def main(args:List[str] = None) -> None: