diff COBRAxy/src/importMetabolicModel.xml @ 550:4cf00f21f609 draft default tip

Uploaded

--- a/COBRAxy/src/importMetabolicModel.xml	Wed Oct 29 11:09:38 2025 +0000
+++ b/COBRAxy/src/importMetabolicModel.xml	Mon Nov 03 14:49:49 2025 +0000
@@ -74,7 +74,7 @@
 
             <!-- Custom model -->
             <when value="Custom_model">
-                <param name="input" argument="--input" type="data" format="json,xml,sbml" label="Custom model file:" />
+                <param name="input" argument="--input" type="data" format="sbml,json,mat,yaml" label="Custom model file:" />
                 <conditional name="cond_medium">
                     <param name="medium_selector" argument="--medium_selector" type="select" label="Medium">
                         <option value="Default" selected="true">Default (custom model medium)</option>
@@ -136,7 +136,7 @@
 	- one tabular file (.tabular) containing reaction IDs, reaction formula, GPR rules, reaction bounds, objective function coefficients, pathways in which the reaction is involved and a flag indicating whether the reaction is an exchange reaction (i.e., related to the growth medium).
     - a log file (.txt).
 
-**TIP 1**: Different input files can be used as the input model. The possible formats are XML (SBML), JSON, MAT or YAML (.yml). 
+**TIP 1**: Different input files can be used as the input model. The possible formats are SBML, JSON, MAT or YAML (.yml). 
     Supported compressed formats: .zip, .gz and .bz2. Filename must follow the pattern: {model_name}.{extension}.[zip|gz|bz2]
     More detail can be found at https://cobrapy.readthedocs.io/en/latest/io.html
 
@@ -153,3 +153,5 @@
 </tool>
 
 
+
+