# HG changeset patch
# User francesco_lapi
# Date 1747071879 0
# Node ID 5dd2ab4637aa0b62246820913d463ca47139b04f
# Parent  49c0b28a203f84280a938267fec6f723f2e35d17
Uploaded

diff -r 49c0b28a203f -r 5dd2ab4637aa COBRAxy/rps_generator.py
--- a/COBRAxy/rps_generator.py	Mon May 12 17:39:26 2025 +0000
+++ b/COBRAxy/rps_generator.py	Mon May 12 17:44:39 2025 +0000
@@ -218,9 +218,10 @@
         rps_scores[cell_line_name] = calculate_rps(reactions, abundances, black_list, missing_list)
     
     df = pd.DataFrame.from_dict(rps_scores)
-    print(df)
-    df.rename(columns={'Unnamed: 0': 'Reactions'}, inplace=True)
-    df.to_csv(ARGS.rps_output, sep = '\t', na_rep = "None", index = False)
+
+    df.index.name = 'Reactions'
+    df.to_csv(ARGS.rps_output, sep='\t', na_rep='None', index=True)
+
 
 ############################ main ####################################
 def main(args:List[str] = None) -> None: