Mercurial > repos > bimib > cobraxy

changeset 373:72f592fe1f7d draft

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Uploaded
author francesco_lapi
date Fri, 05 Sep 2025 05:54:35 +0000
parents d0a307c3ae36
children 5c98a5cd8bd8
files COBRAxy/custom_data_generator.py
diffstat 1 files changed, 3 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/custom_data_generator.py	Fri Sep 05 00:19:08 2025 +0000
+++ b/COBRAxy/custom_data_generator.py	Fri Sep 05 05:54:35 2025 +0000
@@ -39,10 +39,7 @@
     parser.add_argument("--output_format", type=str, choices=["tabular", "xlsx"], required=True,
                         help="Output format: CSV (tabular) or Excel (xlsx)")
     
-    parser.add_argument("--out_tabular", type=str,
-                        help="Output file for the merged dataset (CSV or XLSX)")
-    
-    parser.add_argument("--out_xlsx", type=str,
+    parser.add_argument("--out_data", type=str,
                         help="Output file for the merged dataset (CSV or XLSX)")
     
     parser.add_argument("--tool_dir", type=str, default=os.path.dirname(__file__),
@@ -263,9 +260,9 @@
         #if not ARGS.out_xlsx.lower().endswith(".xlsx"):
         #    ARGS.out_xlsx += ".xlsx"
 
-        merged.to_excel(ARGS.out_xlsx, index=False)
+        merged.to_excel(ARGS.out_data, index=False)
     else:
-        merged.to_csv(ARGS.out_tabular, sep="\t", index=False)
+        merged.to_csv(ARGS.out_data, sep="\t", index=False)
 
 print("CustomDataGenerator: completed successfully")