Mercurial > repos > bimib > cobraxy
changeset 312:a99667e35947 draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Mon, 26 May 2025 14:08:23 +0000 |
| parents | fa041ec0b755 |
| children | e796d29076be |
| files | COBRAxy/dist/cobraxy-0.1.0.tar.gz COBRAxy/dist/cobraxy/meta.yaml COBRAxy/dist/release/channeldata.json COBRAxy/dist/release/index.html COBRAxy/dist/release/noarch/.cache/cache.db COBRAxy/dist/release/noarch/cobraxy-0.1.0-py_0.conda COBRAxy/dist/release/noarch/current_repodata.json COBRAxy/dist/release/noarch/index.html COBRAxy/dist/release/noarch/repodata.json COBRAxy/dist/release/noarch/repodata_from_packages.json COBRAxy/dist/release/win-64/.cache/cache.db COBRAxy/dist/release/win-64/current_repodata.json COBRAxy/dist/release/win-64/index.html COBRAxy/dist/release/win-64/repodata.json COBRAxy/dist/release/win-64/repodata_from_packages.json COBRAxy/setup.py |
| diffstat | 16 files changed, 0 insertions(+), 382 deletions(-) [+] |
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--- a/COBRAxy/dist/cobraxy/meta.yaml Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,80 +0,0 @@ -{% set name = "cobraxy" %} -{% set version = "0.1.0" %} - -package: - name: {{ name|lower }} - version: {{ version }} - -source: - url: file:///C:/Users/f.lapi/Documents/GitHub/COBRAxy/dist/cobraxy-0.1.0.tar.gz - sha256: 9445b95e62cfe5233c29baabd5c02a7732d3d096cccdd99cfea13948d1509d9e - -build: - entry_points: - - custom_data_generator=custom_data_generator:main - - flux_simulation=flux_simulation:main - - flux_to_map=flux_to_map:main - - marea_cluster=marea_cluster:main - - marea=marea:main - - ras_generator=ras_generator:main - - ras_to_bounds=ras_to_bounds:main - - rps_generator=rps_generator:main - noarch: python - script: {{ PYTHON }} -m pip install . -vv --no-build-isolation - number: 0 - -requirements: - host: - - python >=3.8.20,<3.12 - - pip - - setuptools - run: - - python >=3.8.20,<3.12 - - cairosvg ==2.7.1 - - cobra ==0.29.0 - - joblib ==1.4.2 - - lxml ==5.2.2 - - matplotlib-base ==3.7.3 - - numpy ==1.24.4 - - pandas ==2.0.3 - - pyvips ==2.2.3 # [linux or osx] - - scikit-learn ==1.3.2 - - scipy ==1.10.1 - - seaborn ==0.13.0 - - svglib ==1.5.1 - pip: - - pyvips==2.2.3 # [win] - -test: - imports: - - utils - - custom_data_generator - - flux_simulation - - marea_cluster - - ras_generator - - ras_to_bounds - - rps_generator - commands: - - pip install pyvips==2.2.3 - - python -c "import pyvips; print('pyvips version:', pyvips.__version__)" - - pip check - - custom_data_generator --help - - flux_simulation --help - - flux_to_map --help - - marea_cluster --help - - marea --help - - ras_generator --help - - ras_to_bounds --help - - rps_generator --help - requires: - - pip - -about: - home: https://github.com/CompBtBs/COBRAxy.git - summary: A collection of tools for metabolic flux analysis in Galaxy. - #license: '' - #license_file: PLEASE_ADD_LICENSE_FILE - -extra: - recipe-maintainers: - - Francesco2304
--- a/COBRAxy/dist/release/channeldata.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"channeldata_version":1,"packages":{"cobraxy":{"activate.d":false,"binary_prefix":false,"deactivate.d":false,"home":"https://github.com/CompBtBs/COBRAxy.git","post_link":false,"pre_link":false,"pre_unlink":false,"run_exports":{},"source_url":"file:///C:/Users/f.lapi/Documents/GitHub/COBRAxy/dist/cobraxy-0.1.0.tar.gz","subdirs":["noarch"],"summary":"A collection of tools for metabolic flux analysis in Galaxy.","text_prefix":false,"timestamp":1741366947,"version":"0.1.0"}},"subdirs":["noarch","win-64"]}
--- a/COBRAxy/dist/release/index.html Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,90 +0,0 @@ -<html> -<head> - <title>release</title> - <style type="text/css"> - a, a:active { - text-decoration: none; color: blue; - } - a:visited { - color: #48468F; - } - a:hover, a:focus { - text-decoration: underline; color: red; - } - body { - background-color: #F5F5F5; - } - h2 { - margin-bottom: 12px; - } - th, td { - font: 100% monospace; text-align: left; - } - th { - font-weight: bold; padding-right: 14px; padding-bottom: 3px; - } - th.tight { - padding-right: 6px; - } - td { - padding-right: 14px; - } - td.tight { - padding-right: 8px; - } - td.s, th.s { - text-align: right; - } - td.summary { - white-space: nowrap; - overflow: hidden; - } - td.packagename { - white-space: nowrap; - text-overflow: ellipsis; - overflow: hidden; - max-width: 180px; - padding-right: 8px; - } - td.version { - //white-space: nowrap; - overflow: hidden; - max-width: 90px; - padding-right: 8px; - } - table { - background-color: white; - border-top: 1px solid #646464; - border-bottom: 1px solid #646464; - padding-top: 10px; - padding-bottom: 14px; - } - address { - color: #787878; - padding-top: 10px; - } - </style> -</head> -<body> - <h2>release</h2> - <h3><a href="rss.xml">RSS Feed</a> <a href="channeldata.json">channeldata.json</a></h3> -<a href="noarch">noarch</a> <a href="win-64">win-64</a> <table> - <tr> - <th style="padding-right:18px;">Package</th> - <th>Latest Version</th> - <th>Doc</th> - <th>Dev</th> - <th>License</th> -<th class="tight">win-64</th><th class="tight">noarch</th> <th>Summary</th> - </tr> - <tr> - <td class="packagename"><a href="https://github.com/CompBtBs/COBRAxy.git">cobraxy</a></td> - <td class="version">0.1.0</td> - <td></td> - <td></td> - <td class="tight"></td> -<td></td><td>X</td> <td class="summary">A collection of tools for metabolic flux analysis in Galaxy.</td> - </tr> </table> - <address>Updated: 2025-03-07 17:03:09 +0000 - Files: 1</address> -</body> -</html> \ No newline at end of file
--- a/COBRAxy/dist/release/noarch/current_repodata.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"noarch"},"packages":{},"packages.conda":{"cobraxy-0.1.0-py_0.conda":{"build":"py_0","build_number":0,"depends":["cairosvg 2.7.1","cobra 0.29.0","joblib 1.4.2","lxml 5.2.2","matplotlib-base 3.7.3","numpy 1.24.4","pandas 2.0.3","python >=3.8.20,<3.12","scikit-learn 1.3.2","scipy 1.10.1","seaborn 0.13.0","svglib 1.5.1"],"legacy_bz2_md5":null,"md5":"3ce06fbcbd3360c12bac9adf7957ab85","name":"cobraxy","noarch":"python","sha256":"caba0a0729ba111c4a65a6c1450653275f6e0cfdeb052f7e7a8981cc2bbc447e","size":51008,"subdir":"noarch","timestamp":1741366947437,"version":"0.1.0"}},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/dist/release/noarch/index.html Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,76 +0,0 @@ -<html> -<head> - <title>release/noarch</title> - <style type="text/css"> - a, a:active { - text-decoration: none; color: blue; - } - a:visited { - color: #48468F; - } - a:hover, a:focus { - text-decoration: underline; color: red; - } - body { - background-color: #F5F5F5; - } - h2 { - margin-bottom: 12px; - } - th, td { - font: 100% monospace; text-align: left; - } - th { - font-weight: bold; padding-right: 14px; padding-bottom: 3px; - } - td { - padding-right: 20px; - } - td.s, th.s { - text-align: right; - } - table { - background-color: white; - border-top: 1px solid #646464; - border-bottom: 1px solid #646464; - padding-top: 10px; - padding-bottom: 14px; - } - address { - color: #787878; - padding-top: 10px; - } - </style> -</head> -<body> - <h2>release/noarch</h2> - <table> - <tr> - <th>Filename</th> - <th>Size</th> - <th>Last Modified</th> - <th>SHA256</th> - <th>MD5</th> - </tr> - <tr> - <td><a href="repodata.json">repodata.json</a></td> - <td class="s">601 B</td> - <td>2025-03-07 17:02:28 +0000</td> - <td>f8cfc8b6d1f71e9b13db3152bbe3fdfac3d5ca94c748a279599dd6f6872a5ba2</td> - <td>21106deab69c56a7e13f5167091e9860</td> - </tr> <tr> - <td><a href="repodata_from_packages.json">repodata_from_packages.json</a></td> - <td class="s">601 B</td> - <td>2025-03-07 17:02:28 +0000</td> - <td>f8cfc8b6d1f71e9b13db3152bbe3fdfac3d5ca94c748a279599dd6f6872a5ba2</td> - <td>21106deab69c56a7e13f5167091e9860</td> - </tr> <tr> - <td><a href="cobraxy-0.1.0-py_0.conda">cobraxy-0.1.0-py_0.conda</a></td> - <td class="s">50 KB</td> - <td>2025-03-07 17:02:27 +0000</td> - <td>caba0a0729ba111c4a65a6c1450653275f6e0cfdeb052f7e7a8981cc2bbc447e</td> - <td>3ce06fbcbd3360c12bac9adf7957ab85</td> - </tr> </table> - <address>Updated: 2025-03-07 17:03:09 +0000 - Files: 1</address> -</body> -</html> \ No newline at end of file
--- a/COBRAxy/dist/release/noarch/repodata.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"noarch"},"packages":{},"packages.conda":{"cobraxy-0.1.0-py_0.conda":{"build":"py_0","build_number":0,"depends":["cairosvg 2.7.1","cobra 0.29.0","joblib 1.4.2","lxml 5.2.2","matplotlib-base 3.7.3","numpy 1.24.4","pandas 2.0.3","python >=3.8.20,<3.12","scikit-learn 1.3.2","scipy 1.10.1","seaborn 0.13.0","svglib 1.5.1"],"md5":"3ce06fbcbd3360c12bac9adf7957ab85","name":"cobraxy","noarch":"python","sha256":"caba0a0729ba111c4a65a6c1450653275f6e0cfdeb052f7e7a8981cc2bbc447e","size":51008,"subdir":"noarch","timestamp":1741366947437,"version":"0.1.0"}},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/dist/release/noarch/repodata_from_packages.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"noarch"},"packages":{},"packages.conda":{"cobraxy-0.1.0-py_0.conda":{"build":"py_0","build_number":0,"depends":["cairosvg 2.7.1","cobra 0.29.0","joblib 1.4.2","lxml 5.2.2","matplotlib-base 3.7.3","numpy 1.24.4","pandas 2.0.3","python >=3.8.20,<3.12","scikit-learn 1.3.2","scipy 1.10.1","seaborn 0.13.0","svglib 1.5.1"],"md5":"3ce06fbcbd3360c12bac9adf7957ab85","name":"cobraxy","noarch":"python","sha256":"caba0a0729ba111c4a65a6c1450653275f6e0cfdeb052f7e7a8981cc2bbc447e","size":51008,"subdir":"noarch","timestamp":1741366947437,"version":"0.1.0"}},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/dist/release/win-64/current_repodata.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"win-64"},"packages":{},"packages.conda":{},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/dist/release/win-64/index.html Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,70 +0,0 @@ -<html> -<head> - <title>release/win-64</title> - <style type="text/css"> - a, a:active { - text-decoration: none; color: blue; - } - a:visited { - color: #48468F; - } - a:hover, a:focus { - text-decoration: underline; color: red; - } - body { - background-color: #F5F5F5; - } - h2 { - margin-bottom: 12px; - } - th, td { - font: 100% monospace; text-align: left; - } - th { - font-weight: bold; padding-right: 14px; padding-bottom: 3px; - } - td { - padding-right: 20px; - } - td.s, th.s { - text-align: right; - } - table { - background-color: white; - border-top: 1px solid #646464; - border-bottom: 1px solid #646464; - padding-top: 10px; - padding-bottom: 14px; - } - address { - color: #787878; - padding-top: 10px; - } - </style> -</head> -<body> - <h2>release/win-64</h2> - <table> - <tr> - <th>Filename</th> - <th>Size</th> - <th>Last Modified</th> - <th>SHA256</th> - <th>MD5</th> - </tr> - <tr> - <td><a href="repodata.json">repodata.json</a></td> - <td class="s">96 B</td> - <td>2025-03-07 16:59:38 +0000</td> - <td>80f1769e75036891cfc10fc66eca8134a78b12e6e5cae86132db6148cf970bb1</td> - <td>fae3e0350ae934ae1572b2b0f28dcf74</td> - </tr> <tr> - <td><a href="repodata_from_packages.json">repodata_from_packages.json</a></td> - <td class="s">96 B</td> - <td>2025-03-07 16:59:38 +0000</td> - <td>80f1769e75036891cfc10fc66eca8134a78b12e6e5cae86132db6148cf970bb1</td> - <td>fae3e0350ae934ae1572b2b0f28dcf74</td> - </tr> </table> - <address>Updated: 2025-03-07 17:03:09 +0000 - Files: 0</address> -</body> -</html> \ No newline at end of file
--- a/COBRAxy/dist/release/win-64/repodata.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"win-64"},"packages":{},"packages.conda":{},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/dist/release/win-64/repodata_from_packages.json Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"info":{"subdir":"win-64"},"packages":{},"packages.conda":{},"removed":[],"repodata_version":1} \ No newline at end of file
--- a/COBRAxy/setup.py Mon May 26 14:06:38 2025 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,59 +0,0 @@ -from setuptools import setup, find_packages - -setup( - name='cobraxy', - version='0.1.0', - description='A collection of tools for metabolic flux analysis in Galaxy.', - long_description=open('README.md').read(), - long_description_content_type='text/markdown', - author='', - author_email='', - url='https://github.com/CompBtBs/COBRAxy.git', - license='', - packages=find_packages(include=["utils", "utils.*"]), - py_modules=[ - 'custom_data_generator', - 'flux_simulation', - 'flux_to_map', - 'marea_cluster', - 'marea', - 'ras_generator', - 'ras_to_bounds', - 'rps_generator' - ], - include_package_data=True, - install_requires=[ - 'cairosvg==2.7.1', - 'cobra==0.29.0', - 'joblib==1.4.2', - 'lxml==5.2.2', - 'matplotlib==3.7.3', - 'numpy==1.24.4', - 'pandas==2.0.3', - 'pyvips==2.2.3', - 'scikit-learn==1.3.2', - 'scipy==1.11', - 'seaborn==0.13.0', - 'svglib==1.5.1', - 'anndata==0.8.0', - 'pydeseq2==0.5.1' - ], - entry_points={ - 'console_scripts': [ - 'custom_data_generator=custom_data_generator:main', - 'flux_simulation=flux_simulation:main', - 'flux_to_map=flux_to_map:main', - 'marea_cluster=marea_cluster:main', - 'marea=marea:main', - 'ras_generator=ras_generator:main', - 'ras_to_bounds=ras_to_bounds:main', - 'rps_generator=rps_generator:main' - ], - }, - classifiers=[ - 'Programming Language :: Python :: 3', - 'License :: OSI Approved :: MIT License', - 'Operating System :: OS Independent', - ], - python_requires='>=3.8.20,<3.12', -)