Mercurial > repos > bimib > cobraxy
changeset 518:c3c1d3b3941f draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Thu, 09 Oct 2025 10:00:22 +0000 |
| parents | c66aa96336d3 |
| children | 8f65bed8d4cc |
| files | COBRAxy/flux_simulation.xml |
| diffstat | 1 files changed, 26 insertions(+), 8 deletions(-) [+] |
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--- a/COBRAxy/flux_simulation.xml Thu Oct 09 10:00:03 2025 +0000 +++ b/COBRAxy/flux_simulation.xml Thu Oct 09 10:00:22 2025 +0000 @@ -17,7 +17,7 @@ <![CDATA[ python $__tool_directory__/flux_simulation.py --tool_dir $__tool_directory__ - + --model_and_bounds $model_and_bounds.model_and_bounds #if $model_and_bounds.model_and_bounds == 'True': @@ -65,13 +65,31 @@ #end if --out_log $log - --out_fluxes $fluxes_results - --out_mean $mean_results - --out_median $median_results - --out_quantiles $quantile_results - --out_fva $fva_results - --out_pfba $pFBA_results - --out_sensitivity $sensitivity_results + + #if $sampling_params.sampling_enabled == 'true': + #if 'mean' in str($sampling_params.output_types): + --out_mean $mean_results + #end if + #if 'median' in str($sampling_params.output_types): + --out_median $median_results + #end if + #if 'quantiles' in str($sampling_params.output_types): + --out_quantiles $quantile_results + #end if + #if 'fluxes' in str($sampling_params.output_types): + --out_fluxes $fluxes_results + #end if + #end if + + #if 'FVA' in str($output_types_analysis): + --out_fva $fva_results + #end if + #if 'pFBA' in str($output_types_analysis): + --out_pfba $pFBA_results + #end if + #if 'sensitivity' in str($output_types_analysis): + --out_sensitivity $sensitivity_results + #end if ]]> </command>