comparison Marea/ras_generator.py @ 77:3b0e71e28c0b draft

Fix custom rules not in xml

76:3f144565551f

            warnings.simplefilter('ignore')
            recon = cb.io.read_sbml_model(data)
        react = recon.reactions
        rules = [react[i].gene_reaction_rule for i in range(len(react))]
        ids = [react[i].id for i in range(len(react))]
    except cb.io.sbml3.CobraSBMLError:
        try:
            data = (pd.read_csv(data, sep = '\t', dtype = str, engine='python')).fillna('')
            if len(data.columns) < 2:
                sys.exit('Execution aborted: wrong format of '+
                         'custom datarules\n')

77:3b0e71e28c0b

            warnings.simplefilter('ignore')
            recon = cb.io.read_sbml_model(data)
        react = recon.reactions
        rules = [react[i].gene_reaction_rule for i in range(len(react))]
        ids = [react[i].id for i in range(len(react))]
    except:
        try:
            data = (pd.read_csv(data, sep = '\t', dtype = str, engine='python')).fillna('')
            if len(data.columns) < 2:
                sys.exit('Execution aborted: wrong format of '+
                         'custom datarules\n')