Mercurial > repos > bimib > marea
comparison Marea/marea.xml @ 2:3b3d0e5d0802 draft
Uploaded
| author | bimib |
|---|---|
| date | Wed, 07 Nov 2018 07:16:37 -0500 |
| parents | 9e63d5f02d62 |
| children | 02577e65dcca |
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| 1:9e63d5f02d62 | 2:3b3d0e5d0802 |
|---|---|
| 1 <tool id="MaREA" name="Metabolic Enrichment Analysis"> | 1 <tool id="MaREA" name="Metabolic Enrichment Analysis"> |
| 2 <description>for Galaxy</description> | 2 <description>for Galaxy</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>marea_macros.xml</import> | 4 <import>marea_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | |
| 7 <requirements> | 6 <requirements> |
| 7 <requirement type="package">pandas</requirement> | |
| 8 <requirement type="package">scipy</requirement> | |
| 9 <requirement type="package">cobrapy</requirement> | |
| 10 <requirement type="package">python-libsbml</requirement> | |
| 8 <requirement type="package">lxml</requirement> | 11 <requirement type="package">lxml</requirement> |
| 9 <requirement type="package">svglib</requirement> | 12 <requirement type="package">svglib</requirement> |
| 10 <requirement type="package">reportlab</requirement> | 13 <requirement type="package">reportlab</requirement> |
| 11 </requirements> | 14 </requirements> |
| 12 <command detect_errors="exit_code"> | 15 <command detect_errors="exit_code"> |
| 42 ]]> | 45 ]]> |
| 43 </command> | 46 </command> |
| 44 | 47 |
| 45 <inputs> | 48 <inputs> |
| 46 <conditional name="cond_rule"> | 49 <conditional name="cond_rule"> |
| 47 <expand macro="options" /> | 50 <expand macro="options"/> |
| 48 <when value="HMRcore"> | 51 <when value="HMRcore"> |
| 49 </when> | 52 </when> |
| 50 <when value="Recon"> | 53 <when value="Recon"> |
| 51 </when> | 54 </when> |
| 52 <when value="Custom"> | 55 <when value="Custom"> |