comparison Marea/marea_cluster.xml @ 2:3b3d0e5d0802 draft

Uploaded

1:9e63d5f02d62

<tool id="MaREA_cluester" name="MaREA cluster analysis">
    <description>of Reaction Activity Scores</description>
    <macros>
        <import>marea_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <requirements>
        <requirement type="package">scikit-learn</requirement>
        <requirement type="package">matplotlib</requirement>
    </requirements>
    <command>
        <![CDATA[

        --elbow $elbow
        ]]>
    </command>
    <inputs>
        <conditional name="cond_rule">
            <expand macro="options" />
            <when value="Custom">
                <param name="Custom_rules" type="data" format="tabular, csv, tsv, xml" label="Custom rules" />
            </when>
        </conditional>
        <param name="input" argument="--data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" />

2:3b3d0e5d0802

<tool id="MaREA_cluester" name="MaREA cluster analysis">
    <description>of Reaction Activity Scores</description>
    <macros>
        <import>marea_macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package">pandas</requirement>
        <requirement type="package">scipy</requirement>
        <requirement type="package">cobrapy</requirement>
        <requirement type="package">python-libsbml</requirement>
        <requirement type="package">scikit-learn</requirement>
        <requirement type="package">matplotlib</requirement>
    </requirements>
    <command>
        <![CDATA[

        --elbow $elbow
        ]]>
    </command>
    <inputs>
        <conditional name="cond_rule">
            <expand macro="options"/>
            <when value="Custom">
                <param name="Custom_rules" type="data" format="tabular, csv, tsv, xml" label="Custom rules" />
            </when>
        </conditional>
        <param name="input" argument="--data" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" />