comparison Marea/marea_cluster.xml @ 28:e6831924df01 draft

small fixes (elbow plot and output managment)

27:8c480c977a12

        <![CDATA[
      	python $__tool_directory__/marea_cluster.py
        --input $input
      	--tool_dir $__tool_directory__
        --out_log $log
        --cluster_type ${data.clust_type}
        #if $data.clust_type == 'kmeans':
        	--k_min ${data.k_min}
        	--k_max ${data.k_max}
        	--elbow ${data.elbow}

                	<option value="kmeans" selected="true">KMeans</option>
                	<option value="dbscan">DBSCAN</option>
                	<option value="hierarchy">Agglomerative Hierarchical</option>
        	</param>
        	<when value="kmeans">
        		<param name="k_min" argument="--k_min" type="integer" min="2" max="99" value="3" label="Min number of clusters (k) to be tested" />
        		<param name="k_max" argument="--k_max" type="integer" min="3" max="99" value="5" label="Max number of clusters (k) to be tested" />
        		<param name="elbow" argument="--elbow" type="boolean" value="true" label="Draw the elbow plot from k-min to k-max"/>
        		<param name="silhouette" argument="--silhouette" type="boolean" value="true" label="Draw the Silhouette plot from k-min to k-max"/>
        	</when>
        	<when value="dbscan">

		</conditional>
    </inputs>

    <outputs>
        <data format="txt" name="log" label="${tool.name} - Log" />
        <collection name="results" type="list" label="${tool.name} - Results">
            <discover_datasets pattern="__name_and_ext__" directory="clustering"/>
        </collection>
    </outputs>
    <help>
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28:e6831924df01

        <![CDATA[
      	python $__tool_directory__/marea_cluster.py
        --input $input
      	--tool_dir $__tool_directory__
        --out_log $log
        --best_cluster $best_cluster
        --cluster_type ${data.clust_type}
        #if $data.clust_type == 'kmeans':
        	--k_min ${data.k_min}
        	--k_max ${data.k_max}
        	--elbow ${data.elbow}

                	<option value="kmeans" selected="true">KMeans</option>
                	<option value="dbscan">DBSCAN</option>
                	<option value="hierarchy">Agglomerative Hierarchical</option>
        	</param>
        	<when value="kmeans">
        		<param name="k_min" argument="--k_min" type="integer" min="1" max="99" value="3" label="Min number of clusters (k) to be tested" />
        		<param name="k_max" argument="--k_max" type="integer" min="3" max="99" value="5" label="Max number of clusters (k) to be tested" />
        		<param name="elbow" argument="--elbow" type="boolean" value="true" label="Draw the elbow plot from k-min to k-max"/>
        		<param name="silhouette" argument="--silhouette" type="boolean" value="true" label="Draw the Silhouette plot from k-min to k-max"/>
        	</when>
        	<when value="dbscan">

		</conditional>
    </inputs>

    <outputs>
        <data format="txt" name="log" label="${tool.name} - Log" />
        <data format="tabular" name="best_cluster" label="${tool.name} - Best cluster" />
        <collection name="results" type="list" label="${tool.name} - Plots and results">
            <discover_datasets pattern="__name_and_ext__" directory="clustering"/>
        </collection>
    </outputs>
    <help>
<![CDATA[