Mercurial > repos > bimib > marea
diff Marea/marea_cluster.xml @ 31:944e15aa970a draft
Uploaded
| author | bimib |
|---|---|
| date | Tue, 15 Oct 2019 12:22:43 -0400 |
| parents | 9fcb0e8d6d47 |
| children | abf0bfe01c78 |
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--- a/Marea/marea_cluster.xml Tue Oct 15 12:21:16 2019 -0400 +++ b/Marea/marea_cluster.xml Tue Oct 15 12:22:43 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="MaREA_cluester" name="Cluster Analysis" version="1.0.5"> +<tool id="MaREA_cluester" name="Cluster Analysis" version="1.0.6"> <description></description> <macros> <import>marea_macros.xml</import> @@ -38,7 +38,7 @@ ]]> </command> <inputs> - <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="RNAseq of all samples" /> + <param name="input" argument="--input" type="data" format="tabular, csv, tsv" label="Input dataset" /> <conditional name="data"> <param name="clust_type" argument="--cluster_type" type="select" label="Choose clustering type:"> @@ -47,8 +47,8 @@ <option value="hierarchy">Agglomerative Hierarchical</option> </param> <when value="kmeans"> - <param name="k_min" argument="--k_min" type="integer" min="1" max="99" value="3" label="Min number of clusters (k) to be tested" /> - <param name="k_max" argument="--k_max" type="integer" min="3" max="99" value="5" label="Max number of clusters (k) to be tested" /> + <param name="k_min" argument="--k_min" type="integer" min="2" max="20" value="2" label="Min number of clusters (k) to be tested" /> + <param name="k_max" argument="--k_max" type="integer" min="2" max="20" value="3" label="Max number of clusters (k) to be tested" /> <param name="elbow" argument="--elbow" type="boolean" value="true" label="Draw the elbow plot from k-min to k-max"/> <param name="silhouette" argument="--silhouette" type="boolean" value="true" label="Draw the Silhouette plot from k-min to k-max"/> </when>