# HG changeset patch # User luca_milaz # Date 1726650758 0 # Node ID 86f6eff18ea8d32f52f4f8e79a3f422ebd9aef41 # Parent f847aea6311ac5451dbca1e8c5cf441c2f93bc47 Uploaded diff -r f847aea6311a -r 86f6eff18ea8 marea_2/custom_data_generator.xml --- a/marea_2/custom_data_generator.xml Wed Sep 18 09:12:05 2024 +0000 +++ b/marea_2/custom_data_generator.xml Wed Sep 18 09:12:38 2024 +0000 @@ -43,7 +43,8 @@ What it does ------------- -This tool generates four files containing reactions, rules, bounds and growth medium, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules. +This tool generates two files containing reactions and rules respectively, starting from a custom model in JSON or XML format, that can be used as inputs for the RAS and RPS generator modules. + Accepted files: - A model: JSON or XML file reporting reactions and rules contained in the model. @@ -54,8 +55,6 @@ The tool generates: - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle. - reactions: reporting the reactions in the custom model given. Format: csv or pickle. - - bounds: reporting the lower and upper bounds of custom model. Format: csv or pickle. - - medium: reporting a simple list containing the model exchange reactions. Format: csv or pickle. - a log file (.txt). ]]>