Mercurial > repos > bimib > marea_2

changeset 192:37f97e1db452 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Tue, 30 Jul 2024 21:28:28 +0000
parents a6e3f661e77a
children 560aede85627
files marea_2/flux_simulation.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/flux_simulation.py	Tue Jul 30 20:18:15 2024 +0000
+++ b/marea_2/flux_simulation.py	Tue Jul 30 21:28:28 2024 +0000
@@ -262,7 +262,7 @@
 def fluxes_analysis(model:cobra.Model,  model_name:str, output_types:List)-> List[pd.DataFrame]:
 
     df_pFBA = pd.DataFrame()
-    df_FVA= pd.DataFrame()
+    
     df_sensitivity= pd.DataFrame()
 
     for output_type in output_types:
@@ -280,7 +280,7 @@
             for rxn in fva.index.to_list():
                 columns.append(rxn + "_min")
                 columns.append(rxn + "_max")
-            df_FVA.columns = columns
+            df_FVA= pd.DataFrame(columns = columns)
             for index_rxn, row in fva.iterrows():
                 df_FVA.loc[0, index_rxn+ "_min"] = fva.loc[index_rxn, "minimum"]
                 df_FVA.loc[0, index_rxn+ "_max"] = fva.loc[index_rxn, "maximum"]