Mercurial > repos > bimib > marea_2
changeset 196:4aca24a98a4c draft
Uploaded
| author | francesco_lapi |
|---|---|
| date | Wed, 31 Jul 2024 14:28:30 +0000 |
| parents | 1579b38b9c90 |
| children | 036f93eca89c |
| files | marea_2/flux_to_map.py |
| diffstat | 1 files changed, 12 insertions(+), 5 deletions(-) [+] |
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--- a/marea_2/flux_to_map.py Wed Jul 31 14:23:43 2024 +0000 +++ b/marea_2/flux_to_map.py Wed Jul 31 14:28:30 2024 +0000 @@ -483,24 +483,29 @@ pValue = values[0] foldChange = values[1] z_score = values[2] - + print(reactionId) if isinstance(foldChange, str): foldChange = float(foldChange) if pValue >= ARGS.pValue: # pValue above tresh: dashed arrow INSIGNIFICANT_ARROW.styleReactionElements(metabMap, reactionId) + print(1) continue if abs(foldChange) < (ARGS.fChange - 1) / (abs(ARGS.fChange) + 1): INVALID_ARROW.styleReactionElements(metabMap, reactionId) + print(2) continue width = Arrow.MAX_W if not math.isinf(foldChange): - try: width = max(abs(z_score * Arrow.MAX_W) / maxNumericZScore, Arrow.MIN_W) + try: + width = max(abs(z_score * Arrow.MAX_W) / maxNumericZScore, Arrow.MIN_W) + print(3) except ZeroDivisionError: pass - #if not reactionId.endswith("_RV"): # RV stands for reversible reactions - # Arrow(width, ArrowColor.fromFoldChangeSign(foldChange)).styleReactionElements(metabMap, reactionId) - # continue + if not reactionId.endswith("_RV"): # RV stands for reversible reactions + Arrow(width, ArrowColor.fromFoldChangeSign(foldChange)).styleReactionElements(metabMap, reactionId) + print(4) + continue #reactionId = reactionId[:-3] # Remove "_RV" @@ -514,9 +519,11 @@ # vvv These 2 if statements can both be true and can both happen if ARGS.net: # style arrow head(s): arrow.styleReactionElements(metabMap, reactionId + ("_B" if inversionScore == 2 else "_F")) + print(5) if not ARGS.using_RAS: # style arrow body arrow.styleReactionElements(metabMap, reactionId, mindReactionDir = False) + print(6) ############################ split class ###################################### def split_class(classes :pd.DataFrame, resolve_rules :Dict[str, List[float]]) -> Dict[str, List[List[float]]]: