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changeset 81:5229ce78799d draft

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Uploaded
author luca_milaz
date Fri, 19 Jul 2024 19:54:29 +0000
parents 74b162f74f4a
children c7ef1436574e
files marea_2/custom_data_generator.py
diffstat 1 files changed, 9 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/custom_data_generator.py	Fri Jul 19 19:51:19 2024 +0000
+++ b/marea_2/custom_data_generator.py	Fri Jul 19 19:54:29 2024 +0000
@@ -120,18 +120,18 @@
     return reactionUtils.create_reaction_dict(unparsedReactions)
 
 def get_medium(model:cobra.Model) -> list:
-  trueMedium=[]
-  for r in model.reactions:
-    positiveCoeff=0
-    for m in r.metabolites:
-      if r.get_coefficient(m.id)>0:
-        positiveCoeff=1;
-    if (positiveCoeff==0 and r.lower_bound<0):
-      trueMedium.append(r)
+    trueMedium=[]
+    for r in model.reactions:
+        positiveCoeff=0
+        for m in r.metabolites:
+            if r.get_coefficient(m.id)>0:
+                positiveCoeff=1;
+        if (positiveCoeff==0 and r.lower_bound<0):
+            trueMedium.append(r)
 
     df_medium = pd.DataFrame(columns="Reaction")
     df_medium["Reaction"] = trueMedium
-  return df_medium
+    return df_medium
 
 def generate_bounds(model:cobra.Model) -> Dict[ReactionId, Tuple[float, float]]: