Mercurial > repos > bimib > marea_2

changeset 333:7056487831c4 draft

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Uploaded
author luca_milaz
date Mon, 05 Aug 2024 19:56:02 +0000
parents 7113cf797cfa
children 7a44407fb2f3
files marea_2/ras_generator.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/ras_generator.py	Mon Aug 05 19:51:55 2024 +0000
+++ b/marea_2/ras_generator.py	Mon Aug 05 19:56:02 2024 +0000
@@ -654,9 +654,10 @@
     Returns:
         Dict[str, ruleUtils.OpList] : dict mapping reaction IDs to rules.
     """
-
+    dataset = pd.read_csv(ARGS.rule_list, sep = '\t', header = 0, engine='python')
+    
     # csv rules need to be parsed, those in a pickle format are taken to be pre-parsed.
-    return { line[0] : ruleUtils.parseRuleToNestedList(line[1]) for line in utils.readCsv(ARGS.rule_list) }
+    return { line[0] : ruleUtils.parseRuleToNestedList(line[1]) for line in dataset }
 
 def main() -> None:
     """