Mercurial > repos > bimib > marea_2

changeset 354:7490fe8b3bf2 draft

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Uploaded
author luca_milaz
date Thu, 29 Aug 2024 20:36:59 +0000
parents 978a883ab2f4
children 838f67055476
files marea_2/flux_simulation.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/marea_2/flux_simulation.xml	Thu Aug 29 20:31:50 2024 +0000
+++ b/marea_2/flux_simulation.xml	Thu Aug 29 20:36:59 2024 +0000
@@ -98,12 +98,10 @@
     <![CDATA[
 What it does
 -------------
-
 This tool generates flux samples from a model in JSON or XML format using the CBS (Corner-based Sampling) and OPTGP (Improved Artificial Centering Hit-and-Run Sampler) algorithms. It can return sampled fluxes by applying summary statistics such as:
    - Mean
    - Median
    - Quantiles (0.25, 0.50, 0.75)
-   
 Additionally, flux analysis can be performed on the metabolic model, including:
    - Parsimonious-FBA (optimized by Biomass)
    - FVA (Flux Variability Analysis)
@@ -119,6 +117,8 @@
    - **Samples:** A CSV file reporting the sampled fluxes for each reaction.
    - **Log File:** A text file (.txt) containing logs of the operation.
 
+.. class:: infomark
+
 **Tip:** The 'Batches' parameter is useful for managing memory usage by processing samples in smaller batches. For example, if you want to sample 10,000 points, it is recommended to set `n_samples = 1,000` and `n_batches = 10`.
 ]]>
     </help>