Mercurial > repos > bimib > marea_2
changeset 369:c24bc5bd4a93 draft
Uploaded
author | luca_milaz |
---|---|
date | Thu, 19 Sep 2024 08:25:03 +0000 |
parents | 5443289f6edb |
children | 36cb514b68ab |
files | marea_2/custom_data_generator.xml |
diffstat | 1 files changed, 13 insertions(+), 15 deletions(-) [+] |
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--- a/marea_2/custom_data_generator.xml Thu Sep 19 08:24:51 2024 +0000 +++ b/marea_2/custom_data_generator.xml Thu Sep 19 08:25:03 2024 +0000 @@ -16,26 +16,24 @@ python $__tool_directory__/custom_data_generator.py --input $input --name $input.element_identifier - --output_format $output_format --out_log $log + --out_rules $rules + --out_reactions $reactions + --out_bounds $bounds + --out_medium $medium ]]> </command> <inputs> <param name="input" argument="--input" type="data" format="xml, json" label="Custom model:" /> <param name="name" argument="--name" type="text" label="Model's name:" value="Model" help="Default: Model" /> - - <param name="output_format" argument="--output_format" type="select" label="Output files format:"> - <option value="p" selected="true">pickle extension (binary, non-editable, pre-parsed)</option> - <option value="csv">Comma Separated Values (csv text file, editable, raw)</option> - </param> </inputs> <outputs> - <data format="txt" name="log" label="CustomDataGenerator - $name - Log" /> - - <collection name="results" type="list" label="Custom Data Results ($output_format)"> - <discover_datasets name = "collection" pattern="__name_and_ext__" directory="result"/> - </collection> + <data format="txt" name="log" label="${tool.name} - Log" /> + <data format="tabular" name="rules" label="${tool.name} - rules" /> + <data format="tabular" name="reactions" label="${tool.name} - reactions" /> + <data format="tabular" name="bounds" label="${tool.name} - bounds" /> + <data format="tabular" name="medium" label="${tool.name} - medium" /> </outputs> <help> @@ -54,10 +52,10 @@ ------------- The tool generates: - - rules: reporting the rules for each reaction in the custom model given. Format: csv or pickle. - - reactions: reporting the reactions in the custom model given. Format: csv or pickle. - - reaction bounds: reporting the lower and upper bounds of each model reaction. Format: csv or pickle. - - medium composition: reporting the list of exchange/transport reactions. Format: csv or pickle. + - rules: reporting the rules for each reaction in the custom model given. Format: csv (tab separated). + - reactions: reporting the reactions in the custom model given. Format: csv (tab separated). + - reaction bounds: reporting the lower and upper bounds of each model reaction. Format: csv (tab separated). + - medium composition: reporting the list of exchange/transport reactions. Format: csv (tab separated). - a log file (.txt). ]]> </help>