Mercurial > repos > bimib > marea_2
changeset 316:c96a8a3cc81e draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Mon, 05 Aug 2024 12:41:07 +0000 |
| parents | 48d2973faacf |
| children | e7abca5fb51c |
| files | marea_2/flux_to_map.py |
| diffstat | 1 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/marea_2/flux_to_map.py Mon Aug 05 12:32:14 2024 +0000 +++ b/marea_2/flux_to_map.py Mon Aug 05 12:41:07 2024 +0000 @@ -870,8 +870,9 @@ ax.set_axis_off() # Save the image - plt.savefig(path, bbox_inches='tight', pad_inches=0) + plt.savefig(path.show(), bbox_inches='tight', pad_inches=0) plt.close() + pass def computeEnrichmentMeanMedian(metabMap: ET.ElementTree, class_pat: Dict[str, List[List[float]]], ids: List[str]) -> None: """ @@ -901,8 +902,8 @@ min_flux_medians = min(np.min(np.abs(arr)) for arr in medians.values()) min_flux_means = min(np.min(np.abs(arr)) for arr in means.values()) - medians = {key: (median - min_flux_medians) / (max_flux_medians - min_flux_medians) for key, median in medians.items()} - means = {key: (mean - min_flux_means) / (max_flux_means - min_flux_means) for key, mean in means.items()} + medians = {key: median/max_flux_medians for key, median in medians.items()} + means = {key: mean/max_flux_means for key, mean in means.items()} save_colormap_image(min_flux_medians, max_flux_medians, "colormap_median.png") save_colormap_image(min_flux_means, max_flux_means, "colormap_mean.png") @@ -911,8 +912,8 @@ for key in class_pat: # Create color mappings for median and mean - colors_median = {rxn_id: rgb_to_hex(cmap(medians[key][i])) for i, rxn_id in enumerate(ids)} - colors_mean = {rxn_id: rgb_to_hex(cmap(means[key][i])) for i, rxn_id in enumerate(ids)} + colors_median = {rxn_id: rgb_to_hex(cmap(abs(medians[key][i]))) for i, rxn_id in enumerate(ids)} + colors_mean = {rxn_id: rgb_to_hex(cmap(abs(means[key][i]))) for i, rxn_id in enumerate(ids)} for i, rxn_id in enumerate(ids): isNegative = medians[key][i] < 0