# HG changeset patch
# User bimib
# Date 1716383491 0
# Node ID 3a484dc2bced1a3a32a1b295bc53e64865345e31
# Parent  eddc256691a0589a4528cafb823ad91a7c028935
Uploaded

diff -r eddc256691a0 -r 3a484dc2bced Marea-Marea_stageTriennale_dev/rps_generator.py
--- a/Marea-Marea_stageTriennale_dev/rps_generator.py	Wed May 22 13:10:45 2024 +0000
+++ b/Marea-Marea_stageTriennale_dev/rps_generator.py	Wed May 22 13:11:31 2024 +0000
@@ -217,7 +217,9 @@
         abundances = { metab : abundances[pos] for metab, abundances in abundances_dict.items() }
         rps_scores[cell_line_name] = calculate_rps(reactions, abundances, black_list, missing_list)
     
-    pd.DataFrame.from_dict(rps_scores).to_csv(ARGS.rps_output, sep = '\t', index = True)
+    pd.DataFrame.from_dict(rps_scores) \
+                .rename(columns={'Unnamed: 0': 'Reactions'}, inplace=True) \
+                .to_csv(ARGS.rps_output, sep = '\t', na_rep = "None", index = False)
 
 ############################ main ####################################
 def main() -> None: