Mercurial > repos > bioitcore > chimerascan

diff splicetrap/bin/splitdb.sh @ 7:37a16ff93dd9 draft default tip

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planemo upload
author bioitcore
date Thu, 12 Oct 2017 16:26:36 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/splicetrap/bin/splitdb.sh	Thu Oct 12 16:26:36 2017 -0400
@@ -0,0 +1,11 @@
+workingfolder=$1;
+cd $workingfolder
+cut -f1 ../TXdb.bed |uniq >chr.list;
+while read line ;
+do 
+	chr=`echo $line |tr -d "\n"`;
+	grep -w $chr ../TXdb.bed >$chr.bed;
+	split -3000 $chr.bed $chr.;
+	echo $chr....;
+	rm $chr.bed;
+done <chr.list;