# HG changeset patch
# User bioitcore
# Date 1504817592 14400
# Node ID cd336e593a92a745f01ea92bab808ee4dd21fa25
# Parent 312539ee12f4b5b929c5c1855ce1bfb23df04935
planemo upload
diff -r 312539ee12f4 -r cd336e593a92 splice_trap.xml
--- a/splice_trap.xml Thu Sep 07 15:29:43 2017 -0400
+++ b/splice_trap.xml Thu Sep 07 16:53:12 2017 -0400
@@ -4,17 +4,35 @@
bowtie
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+ $__tool_directory__/SpliceTrap.pl -p 8 -l $__tool_directory__ -d hg38v3 -1
+ #if $input_type_conditional.spliceTrap_input_type == "paired"
+ $input_type_conditional.input_1 -2 $input_type_conditional.input_2
+ #else
+ $input_type_conditional.input.forward -2 $input_type_conditional.input.reverse
+ #end if
+ -s $read_size $output1 $output2
+
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@@ -24,7 +42,7 @@
-
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**SpliceTrap**
@@ -33,3 +51,4 @@
+