# HG changeset patch # User bioitcore # Date 1504817592 14400 # Node ID cd336e593a92a745f01ea92bab808ee4dd21fa25 # Parent 312539ee12f4b5b929c5c1855ce1bfb23df04935 planemo upload diff -r 312539ee12f4 -r cd336e593a92 splice_trap.xml --- a/splice_trap.xml Thu Sep 07 15:29:43 2017 -0400 +++ b/splice_trap.xml Thu Sep 07 16:53:12 2017 -0400 @@ -4,17 +4,35 @@ bowtie - + + $__tool_directory__/SpliceTrap.pl -p 8 -l $__tool_directory__ -d hg38v3 -1 + #if $input_type_conditional.spliceTrap_input_type == "paired" + $input_type_conditional.input_1 -2 $input_type_conditional.input_2 + #else + $input_type_conditional.input.forward -2 $input_type_conditional.input.reverse + #end if + -s $read_size $output1 $output2 + - - - + + + + + + + + + + + + + + + - - + + @@ -24,7 +42,7 @@ - + **SpliceTrap** @@ -33,3 +51,4 @@ +