Mercurial > repos > biomonika > linkyx
comparison scripts/isoform_exists.sh @ 0:05c27700e5ca
initial commit
| author | biomonika <biomonika@psu.edu> |
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| date | Thu, 04 Sep 2014 18:24:19 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:05c27700e5ca |
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| 1 #!/bin/bash | |
| 2 #we will search for isoforms of this contig | |
| 3 contig_to_search=$1; | |
| 4 reference=$2; | |
| 5 #including only putative isoforms | |
| 6 part=`echo $contig_to_search | sed -n "s/^\(.*\_c[0-9]\+\)\_seq[0-9]\+/\1/p"`; egrep "$part\_" $reference | grep -v $contig_to_search; |