Mercurial > repos > biomonika > linkyx

diff LINKYX_identify_Y_linked_SNPs.xml @ 2:0d8315be76b7

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Uploaded
author biomonika
date Tue, 17 Feb 2015 21:59:51 -0500
parents 4c5de3a2c54e
children
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--- a/LINKYX_identify_Y_linked_SNPs.xml	Sun Sep 07 23:12:26 2014 -0400
+++ b/LINKYX_identify_Y_linked_SNPs.xml	Tue Feb 17 21:59:51 2015 -0500
@@ -1,15 +1,10 @@
-<tool id="LINKYX_Y" name="LINKYX_Y">
+<tool id="LINKYX_Y" name="LINKYX_Y" version="1.1">
       <description>Identify Y linked contigs from cross</description>
       <requirements>
         <requirement type="set_environment">LINKYX_PATH</requirement>
         <requirement type="set_environment">SAMTOOLS</requirement>
-        <requirement type="package" version="0.1.19">samtools</requirement>
-        <requirement type="package" version="1.0.4">fastq_groomer</requirement>
-        <requirement type="package" version="0.0.1">trinityrnaseq</requirement>
-        <requirement type="package" version="1.2.3">bwa_wrappers</requirement>
-        <requirement type="package" version="1.1.4">sam_to_bam</requirement>
-        <requirement type="package" version="1.0.2">samtools_sort</requirement>
-        <requirement type="package" version="1.56.0">picard</requirement>
+        <requirement type="package" version="0.1.19">samtools-fpic</requirement>
+        <requirement type="package" version="1.6.922">bioperl</requirement>
       </requirements>
       <command interpreter="bash">LINKYX_identify_Y_linked_SNPs.sh $output $input1 $input2 $input3 $input4 $input5 $output1 $output2 $output3 $output4 $output5</command>
       <inputs>
@@ -37,4 +32,4 @@
    This tool identifies Y linked contigs from cross (represented as 4 bam files mapped on male reference).
      </help>
    
-   </tool>
\ No newline at end of file
+   </tool>