Mercurial > repos > biomonika > linkyx

diff LINKYX_mpileup_wrapper.xml @ 1:4c5de3a2c54e

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toolshed2
author biomonika <biomonika@psu.edu>
date Sun, 07 Sep 2014 23:12:26 -0400
parents 05c27700e5ca
children 0d8315be76b7
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--- a/LINKYX_mpileup_wrapper.xml	Thu Sep 04 18:24:19 2014 -0400
+++ b/LINKYX_mpileup_wrapper.xml	Sun Sep 07 23:12:26 2014 -0400
@@ -1,5 +1,10 @@
 <tool id="LINKYX_mpileup" name="LINKYX_mpileup">
       <description>Run mpileup with LINKYX-specific parameters</description>
+      <requirements>
+        <requirement type="set_environment">LINKYX_PATH</requirement>
+        <requirement type="set_environment">SAMTOOLS</requirement>
+        <requirement type="package" version="0.1.19">samtools</requirement>
+      </requirements>
       <command interpreter="bash">LINKYX_mpileup_wrapper.sh $output $input1 $input2</command>
       <inputs>
         <param format="bam" name="input1" type="data" label="Alignment file"/>