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author biomonika <biomonika@psu.edu>
date Thu, 04 Sep 2014 18:24:19 -0400
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LinkYX

Fully automated pipeline for detection of sex linked genes using RNA-Seq data
bitbucket.org/biomonika/linkyx

Please install following dependencies from toolshed:
toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4
toolshed.g2.bx.psu.edu/repos/bhaas/trinityrnaseq/trinityrnaseq/0.0.1
toolshed.g2.bx.psu.edu/repos/devteam/bwa_wrappers/bwa_wrapper/1.2.3
toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.4
toolshed.g2.bx.psu.edu/repos/iuc/samtools_sort/samtools_sort/1.0.2
toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0

If you have any questions, please use following email address: biomonika@psu.edu