Mercurial > repos > biomonika > linkyx
view scripts/isoform_exists.sh @ 2:0d8315be76b7
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author | biomonika |
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date | Tue, 17 Feb 2015 21:59:51 -0500 |
parents | 05c27700e5ca |
children |
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#!/bin/bash #we will search for isoforms of this contig contig_to_search=$1; reference=$2; #including only putative isoforms part=`echo $contig_to_search | sed -n "s/^\(.*\_c[0-9]\+\)\_seq[0-9]\+/\1/p"`; egrep "$part\_" $reference | grep -v $contig_to_search;