Mercurial > repos > biomonika > linkyx
view LINKYX_reformat_trinity_header.xml @ 5:939e59027486
edited README
author | biomonika <biomonika@psu.edu> |
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date | Fri, 20 Feb 2015 14:55:29 -0500 |
parents | 0d8315be76b7 |
children |
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<tool id="reformat_trinity_header" name="reformat_trinity_header" version="1.1"> <description>Reformat Trinity header</description> <requirements> <requirement type="set_environment">LINKYX_PATH</requirement> <requirement type="set_environment">SAMTOOLS</requirement> <requirement type="package" version="0.1.19">samtools-fpic</requirement> <requirement type="package" version="1.6.922">bioperl</requirement> </requirements> <command interpreter="bash">LINKYX_reformat_trinity_header.sh $output $input1</command> <inputs> <param format="fasta" name="input1" type="data" label="Trinity.fasta"/> </inputs> <outputs> <data format="fasta" name="output" /> </outputs> <tests> <test> <output name="out_file1" file="Trinity.fasta"/> </test> </tests> <help> Reformat Trinity header, keep only part until first space. </help> </tool>