Mercurial > repos > biomonika > linkyx

view LINKYX_reformat_trinity_header.xml @ 7:90098d9cb691 default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
workflows updated
author biomonika <biomonika@psu.edu>
date Fri, 20 Feb 2015 18:34:34 -0500
parents 0d8315be76b7
children
line wrap: on
line source

<tool id="reformat_trinity_header" name="reformat_trinity_header" version="1.1">
      <description>Reformat Trinity header</description>
      <requirements>
        <requirement type="set_environment">LINKYX_PATH</requirement>
        <requirement type="set_environment">SAMTOOLS</requirement>
        <requirement type="package" version="0.1.19">samtools-fpic</requirement>
        <requirement type="package" version="1.6.922">bioperl</requirement>
      </requirements>
      <command interpreter="bash">LINKYX_reformat_trinity_header.sh $output $input1</command>
      <inputs>
        <param format="fasta" name="input1" type="data" label="Trinity.fasta"/>
      </inputs>
      <outputs>
        <data format="fasta" name="output" />
      </outputs>
  
     <tests>
       <test>
        <output name="out_file1" file="Trinity.fasta"/>
       </test>
     </tests>
   
     <help>
   Reformat Trinity header, keep only part until first space.
     </help>
   
   </tool>