# HG changeset patch
# User biomonika
# Date 1424231844 18000
# Node ID 8fbe25248354ef132e189033647676d6c1f97585
# Parent  0d8315be76b7534073f2f958bded1d6297ad73e0
Uploaded

diff -r 0d8315be76b7 -r 8fbe25248354 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Feb 17 21:59:51 2015 -0500
+++ b/tool_dependencies.xml	Tue Feb 17 22:57:24 2015 -0500
@@ -16,13 +16,16 @@
     <package name="bioperl" version="1.6.922">
         <install version="1.0">
             <actions>
-                <action type="setup_perl_environment">
+                <action type="set_environment_for_install">
                     <repository changeset_revision="a6c82a5d0b51" name="package_samtools_0_1_19_custom" owner="biomonika" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="samtools-fpic" version="0.1.19" />
                     </repository>
                     <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
+                </action>
+                <action type="setup_perl_environment">
+                    
                     <!-- allow downloading and installing an Perl package from cpan.org-->
                     <package>XML::Parser</package>
                     <package>http://search.cpan.org/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.922.tar.gz</package>