Mercurial > repos > biomonika > package_samtools_0_1_19_custom
annotate tool_dependencies.xml @ 0:a6c82a5d0b51 draft default tip
Uploaded
| author | biomonika |
|---|---|
| date | Tue, 17 Feb 2015 21:40:19 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="samtools-fpic" version="0.1.19"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action> | |
| 7 <action type="shell_command">sed -i 's/O2/O2 -fPIC/' Makefile</action> | |
| 8 <action type="shell_command">make</action> | |
| 9 <action type="set_environment"> | |
| 10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 11 <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable> | |
| 12 </action> | |
| 13 </actions> | |
| 14 </install> | |
| 15 <readme>Compiling samtools with fPIC in order to create bam.h and compiled libbam.a files</readme> | |
| 16 </package> | |
| 17 </tool_dependency> |