Mercurial > repos > biomonika > package_samtools_0_1_19_custom

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author biomonika
date Tue, 17 Feb 2015 21:40:19 -0500
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<?xml version="1.0"?>
<tool_dependency>
  <package name="samtools-fpic" version="0.1.19">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.19/samtools-0.1.19.tar.bz2</action>
                <action type="shell_command">sed -i 's/O2/O2 -fPIC/' Makefile</action>
                <action type="shell_command">make</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="SAMTOOLS" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling samtools with fPIC in order to create bam.h and compiled libbam.a files</readme>
    </package>
</tool_dependency>