Mercurial > repos > biopython > package_biopython_1_61
comparison tool_dependencies.xml @ 2:b482933a6de5 draft
biopython version only with hard dependencies
| author | bgruening |
|---|---|
| date | Mon, 12 Aug 2013 11:29:41 -0400 |
| parents | ededc5ef3fc0 |
| children | ae9dda584395 |
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| 1:ededc5ef3fc0 | 2:b482933a6de5 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="numpy" version="1.7.1"> | 3 <package name="numpy" version="1.7.1"> |
| 4 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="matplotlib" version="1.2.1"> | |
| 7 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <!-- TODO reportlab -> Python Imaging Library | |
| 10 <package name="reportlab" version="1.2.1"> | |
| 11 <repository name="package_reportlab_1_2" owner="bgruening" prior_installation_required="True" /> | |
| 12 </package> | |
| 13 --> | |
| 14 <package name="biopython" version="1.61"> | 6 <package name="biopython" version="1.61"> |
| 15 <install version="1.0"> | 7 <install version="1.0"> |
| 16 <actions> | 8 <actions> |
| 17 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> | 9 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action> |
| 18 <action type="set_environment_for_install"> | 10 <action type="set_environment_for_install"> |
| 19 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 11 <repository changeset_revision="74c21f9bdc39" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 20 <package name="matplotlib" version="1.2.1" /> | |
| 21 </repository> | |
| 22 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
| 23 <package name="numpy" version="1.7.1" /> | 12 <package name="numpy" version="1.7.1" /> |
| 24 </repository> | 13 </repository> |
| 25 </action> | 14 </action> |
| 26 | |
| 27 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 15 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 28 <action type="shell_command"> | 16 <action type="shell_command"> |
| 29 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && | 17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
| 30 export PATH=$PATH:$PATH_NUMPY && | 18 export PATH=$PATH:$PATH_NUMPY && |
| 31 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && | 19 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB && |