Mercurial > repos > biopython > package_biopython_1_61

changeset 1:ededc5ef3fc0 draft

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updated to point to the IUC account for external dependencies
author bgruening
date Mon, 12 Aug 2013 07:26:51 -0400
parents 5d0c54f7fea2
children b482933a6de5
files tool_dependencies.xml
diffstat 1 files changed, 10 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Jul 06 10:30:00 2013 -0400
+++ b/tool_dependencies.xml	Mon Aug 12 07:26:51 2013 -0400
@@ -1,10 +1,10 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="numpy" version="1.7.1">
-        <repository name="package_numpy_1_7" owner="bgruening" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="matplotlib" version="1.2.1">
-        <repository name="package_matplotlib_1_2" owner="bgruening" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
     <!-- TODO reportlab -> Python Imaging Library
     <package name="reportlab" version="1.2.1">
@@ -16,19 +16,21 @@
             <actions>
                 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action>
                 <action type="set_environment_for_install">
-                    <repository name="package_matplotlib_1_2" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
                         <package name="matplotlib" version="1.2.1" />
                     </repository>
-                    <repository name="package_numpy_1_7" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
                         <package name="numpy" version="1.7.1" />
                     </repository>
                 </action>
 
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
-                export PATH=$PATH:$PATH_NUMPY &amp;&amp; 
-                export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB &amp;&amp; 
-                python setup.py install --home $INSTALL_DIR</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+                    export PATH=$PATH:$PATH_NUMPY &amp;&amp; 
+                    export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB &amp;&amp; 
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python
+                </action>
                 <action type="set_environment">
                     <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>