Mercurial > repos > bitlab > gecko
comparison gecko/src/csvFrags2text.c @ 12:7249f6c19612 draft default tip
Uploaded
author | bitlab |
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date | Wed, 18 Nov 2020 08:49:53 +0000 |
parents | cf4c0c822ca9 |
children |
comparison
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11:cf4c0c822ca9 | 12:7249f6c19612 |
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272 | 272 |
273 //readSequenceLength(&n1, fFrags); | 273 //readSequenceLength(&n1, fFrags); |
274 //readSequenceLength(&n2, fFrags); | 274 //readSequenceLength(&n2, fFrags); |
275 // Skip first lines | 275 // Skip first lines |
276 char buffer[READING_FRAG_BUFFER]; | 276 char buffer[READING_FRAG_BUFFER]; |
277 int skipper = 0; while(skipper < 18){ (void) fgets(buffer, READING_FRAG_BUFFER, fFrags); skipper++; } | 277 int skipper = 0; while(skipper < 18){ if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer"); skipper++; } |
278 | 278 |
279 | 279 |
280 | 280 |
281 | 281 |
282 //readFragment(&frag, fFrags); | 282 //readFragment(&frag, fFrags); |
316 //get_seq_from_to_rev(fYrev, fO, frag.yStart, frag.yEnd, RI_Yrev[seqYnew].pos, RI_Yrev[seqYnew].Lac, seqYnew, frag.length, fO); | 316 //get_seq_from_to_rev(fYrev, fO, frag.yStart, frag.yEnd, RI_Yrev[seqYnew].pos, RI_Yrev[seqYnew].Lac, seqYnew, frag.length, fO); |
317 } | 317 } |
318 | 318 |
319 //readFragment(&frag, fFrags); | 319 //readFragment(&frag, fFrags); |
320 if(!feof(fFrags)){ | 320 if(!feof(fFrags)){ |
321 (void) fgets(buffer, READING_FRAG_BUFFER, fFrags); | 321 if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer"); |
322 csv_frag_to_struct_frag(buffer, &frag); | 322 csv_frag_to_struct_frag(buffer, &frag); |
323 | 323 |
324 | 324 |
325 }else{ | 325 }else{ |
326 exit = 1; | 326 exit = 1; |