comparison gecko/src/csvFrags2text.c @ 12:7249f6c19612 draft default tip

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author bitlab
date Wed, 18 Nov 2020 08:49:53 +0000
parents cf4c0c822ca9
children
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11:cf4c0c822ca9 12:7249f6c19612
272 272
273 //readSequenceLength(&n1, fFrags); 273 //readSequenceLength(&n1, fFrags);
274 //readSequenceLength(&n2, fFrags); 274 //readSequenceLength(&n2, fFrags);
275 // Skip first lines 275 // Skip first lines
276 char buffer[READING_FRAG_BUFFER]; 276 char buffer[READING_FRAG_BUFFER];
277 int skipper = 0; while(skipper < 18){ (void) fgets(buffer, READING_FRAG_BUFFER, fFrags); skipper++; } 277 int skipper = 0; while(skipper < 18){ if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer"); skipper++; }
278 278
279 279
280 280
281 281
282 //readFragment(&frag, fFrags); 282 //readFragment(&frag, fFrags);
316 //get_seq_from_to_rev(fYrev, fO, frag.yStart, frag.yEnd, RI_Yrev[seqYnew].pos, RI_Yrev[seqYnew].Lac, seqYnew, frag.length, fO); 316 //get_seq_from_to_rev(fYrev, fO, frag.yStart, frag.yEnd, RI_Yrev[seqYnew].pos, RI_Yrev[seqYnew].Lac, seqYnew, frag.length, fO);
317 } 317 }
318 318
319 //readFragment(&frag, fFrags); 319 //readFragment(&frag, fFrags);
320 if(!feof(fFrags)){ 320 if(!feof(fFrags)){
321 (void) fgets(buffer, READING_FRAG_BUFFER, fFrags); 321 if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer");
322 csv_frag_to_struct_frag(buffer, &frag); 322 csv_frag_to_struct_frag(buffer, &frag);
323 323
324 324
325 }else{ 325 }else{
326 exit = 1; 326 exit = 1;