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fixed binary format in frags align
author bitlab
date Tue, 17 Nov 2020 13:04:23 +0000
parents 3872220d0924
children
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<tool id="frags2align" name="Frags to align">
  <description>Extract alignments from a binary Frags file</description>
  <inputs>
    <param name="fragsFile" type="data" label="Frags file" help="Binary Frags file" />
    <param name="fastaX" type="data" format="fasta" label="Sequence X" help="Query sequence file in fasta format"/>    
    <param name="fastaY" type="data" format="fasta" label="Sequence Y" help="Reference sequence file in fasta format" />
  </inputs>
  <command> make all -C ${__tool_directory__}/src/ ; ${__tool_directory__}/bin/frags2align.sh $fragsFile $fastaX $fastaY $alignments </command>
  <outputs>
    <data name="alignments" format="txt" label="Frags to align for genomes  ${fastaX.name}_${fastaY.name}"/>
  </outputs>
</tool>