# HG changeset patch
# User bitlab
# Date 1605689393 0
# Node ID 7249f6c19612a4b78468dfa94b6f9536d56b7e4e
# Parent  cf4c0c822ca9fe1ba559fc9f5280c5a716873f06
Uploaded

diff -r cf4c0c822ca9 -r 7249f6c19612 gecko/src/csvExtractBorders.c
--- a/gecko/src/csvExtractBorders.c	Wed Nov 18 08:37:31 2020 +0000
+++ b/gecko/src/csvExtractBorders.c	Wed Nov 18 08:49:53 2020 +0000
@@ -290,7 +290,7 @@
 	//SeqX length          : 249250621
 	int64_t xlen, ylen;
 	int skipper = 0; while(skipper < 18){ 
-		(void) fgets(buffer, READING_FRAG_BUFFER, fFrags); 
+		if(NULL == fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer"); 
 
 		if(skipper == 6){
 			sscanf(buffer, "%*s %*s : %"PRId64, &xlen);
@@ -367,7 +367,7 @@
 
 		//readFragment(&frag, fFrags);
 		if(!feof(fFrags)){
-			(void) fgets(buffer, READING_FRAG_BUFFER, fFrags);
+			if(NULL == fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Could not read buffer");
 			csv_frag_to_struct_frag(buffer, &frag);
 
 		
diff -r cf4c0c822ca9 -r 7249f6c19612 gecko/src/csvFrags2text.c
--- a/gecko/src/csvFrags2text.c	Wed Nov 18 08:37:31 2020 +0000
+++ b/gecko/src/csvFrags2text.c	Wed Nov 18 08:49:53 2020 +0000
@@ -274,7 +274,7 @@
 	//readSequenceLength(&n2, fFrags);
 	// Skip first lines
 	char buffer[READING_FRAG_BUFFER];
-	int skipper = 0; while(skipper < 18){ (void) fgets(buffer, READING_FRAG_BUFFER, fFrags); skipper++; }
+	int skipper = 0; while(skipper < 18){ if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer"); skipper++; }
 
 	
 	
@@ -318,7 +318,7 @@
 
 		//readFragment(&frag, fFrags);
 		if(!feof(fFrags)){
-			(void) fgets(buffer, READING_FRAG_BUFFER, fFrags);
+			if(NULL==fgets(buffer, READING_FRAG_BUFFER, fFrags)) terror("Couldnt read buffer");
 			csv_frag_to_struct_frag(buffer, &frag);