diff IMSAME/src/commonFunctions.h @ 0:762009a91895 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IMSAME/src/commonFunctions.h	Sat Dec 15 18:04:10 2018 -0500
@@ -0,0 +1,41 @@
+#ifndef COMMON_FUNCTIONS_H
+#define COMMON_FUNCTIONS_H
+#include "structs.h"
+/**
+ * Print the error message 's' and exit(-1)
+ */
+void terror(char *s);
+
+
+/**
+ * Function to read char by char buffered from a FILE
+ */
+char buffered_fgetc(char *buffer, uint64_t *pos, uint64_t *read, FILE *f);
+
+
+void get_num_seqs_and_length(char * seq_buffer, uint64_t * n_seqs, uint64_t * t_len, LoadingDBArgs * ldbargs);
+
+/*
+    Generates a queue of tasks for threads
+*/
+Queue * generate_queue(Head * queue_head, uint64_t t_reads, uint64_t n_threads, uint64_t levels);
+
+/*
+    Prints a queue task
+*/
+void print_queue(Queue * q);
+
+/*
+    Gets the next task to do when a pthread is free
+*/
+Queue * get_task_from_queue(Head * queue_head, pthread_mutex_t * lock);
+
+uint64_t quick_pow4(uint64_t n);
+
+uint64_t quick_pow4byLetter(uint64_t n, const char c);
+
+uint64_t hashOfWord(const unsigned char * word, uint32_t k);
+
+uint64_t asciiToUint64(const char *text);
+
+#endif /* COMMON_FUNCTIONS_H */