Mercurial > repos > bitlab > plidflow

annotate PLIDflow/scripts/separateChain.sh @ 0:6fcfa4756040 draft

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author bitlab
date Tue, 14 Jan 2020 06:09:42 -0500
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1 #!/bin/bash
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3 # Arguments
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4 # $1 = pdb
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6 grep "ATOM\|HETATM" $1 | awk '{ if(length($5)==1) updateName=$5; if($1 == "ATOM" || $1 == "HETATM"){ print $0 > "chain"updateName".pdb"; }}' ;
6fcfa4756040 Uploaded
bitlab
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7 for i in chain* ; do echo "TER" >> $i ; echo "END" >> $i ; done