Mercurial > repos > bjoern-gruening > bismark
diff README @ 4:427fb56f2e41 draft default tip
- new options
- fixes
| author | bjoern-gruening |
|---|---|
| date | Fri, 01 Mar 2013 13:39:22 -0500 |
| parents | 36d124f44c0a |
| children |
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--- a/README Tue Dec 25 05:54:01 2012 -0500 +++ b/README Fri Mar 01 13:39:22 2013 -0500 @@ -1,8 +1,5 @@ Bismark uses Bowtie or Bowtie2 to map the reads. -Create your reference index with bismark_genome_preparation in your -normal Bowtie2/Botwie index directory. -bismark_genome_preparation will create a Bisulfite_Genome folder directly in -your Bowtie2/Bowtie index directory. If you follow that approach you do not -need to specify or modify an extra *.loc file. -That wrapper will extract the path to the Bisulfite_Genome folder from -./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc. + +Create your reference index with bismark_genome_preparation in your normal Bowtie2/Botwie index directory. +bismark_genome_preparation will create a Bisulfite_Genome folder directly in your Bowtie2/Bowtie index directory. If you follow that approach you do not need to specify or modify an extra *.loc file. +That wrapper will extract the path to the Bisulfite_Genome folder from ./tool-data/bowtie2_indices.loc or ./tool-data/bowtie_indices.loc.