view glimmerHMM/glimmerhmm_to_sequence.xml @ 0:0a15677c6668 default tip

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<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
    <description>converter</description>
    <command interpreter='python'>glimmerhmm_to_sequence.py 
    $glimmerhmm_input
    $genome_input
    $output
    $to_protein
    </command>
    <inputs>
        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
    </inputs>
    <outputs>
        <data name="output" format="fasta" />
    </outputs>
    <help>

**What it does**

It converts the GlimmerHMM GFF output to a Fasta File.

    </help>
</tool>