Mercurial > repos > bjoern-gruening > sed_wrapper
comparison readme.txt @ 0:e850a63e5aed
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| author | bjoern-gruening |
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| date | Thu, 15 Mar 2012 04:53:54 -0400 |
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| -1:000000000000 | 0:e850a63e5aed |
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| 1 Galaxy wrapper for sed | |
| 2 ====================== | |
| 3 | |
| 4 This wrapper is copyright 2012 by Björn Grüning. | |
| 5 | |
| 6 This is a wrapper for the sed command line tool. | |
| 7 | |
| 8 sed is a stream editor included in every unix-derived operating system. | |
| 9 That wrapper only uses a small subset of the sed functionality. Its only a wrapper for: | |
| 10 | |
| 11 sed -r '$pattern' $input | |
| 12 | |
| 13 | |
| 14 WARNING: | |
| 15 ======== | |
| 16 | |
| 17 No syntax check and sanitising will happen in that wrapper. This wrapper may harm your computer ;) | |
| 18 Nevertheless, i think it can be useable for some installations. | |
| 19 | |
| 20 | |
| 21 Installation | |
| 22 ============ | |
| 23 | |
| 24 sed should be available on every unix derived operating system and belongs to the classical unix programms. | |
| 25 No further installation is requiered. | |
| 26 | |
| 27 For more information have a look at the following pages: | |
| 28 | |
| 29 http://en.wikipedia.org/wiki/Sed | |
| 30 http://www.gnu.org/software/sed/manual/sed.html | |
| 31 | |
| 32 To install the wrapper copy the sed folder in the galaxy tools | |
| 33 folder and modify the tools_conf.xml file to make the tool available to Galaxy. | |
| 34 For example: | |
| 35 | |
| 36 <toolbox> | |
| 37 <tool file="text_manipulation/sed.xml" /> | |
| 38 </toolbox> | |
| 39 | |
| 40 | |
| 41 History | |
| 42 ======= | |
| 43 | |
| 44 v0.1 - Initial public release | |
| 45 | |
| 46 | |
| 47 Wrapper Licence (MIT/BSD style) | |
| 48 =============================== | |
| 49 | |
| 50 Permission to use, copy, modify, and distribute this software and its | |
| 51 documentation with or without modifications and for any purpose and | |
| 52 without fee is hereby granted, provided that any copyright notices | |
| 53 appear in all copies and that both those copyright notices and this | |
| 54 permission notice appear in supporting documentation, and that the | |
| 55 names of the contributors or copyright holders not be used in | |
| 56 advertising or publicity pertaining to distribution of the software | |
| 57 without specific prior permission. | |
| 58 | |
| 59 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL | |
| 60 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED | |
| 61 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE | |
| 62 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT | |
| 63 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS | |
| 64 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE | |
| 65 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE | |
| 66 OR PERFORMANCE OF THIS SOFTWARE. | |
| 67 |